msck repair table hive not working

When creating a table using PARTITIONED BY clause, partitions are generated and registered in the Hive metastore. MSCK REPAIR TABLE factory; Now the table is not giving the new partition content of factory3 file. To See HIVE-874 and HIVE-17824 for more details. or the AWS CloudFormation AWS::Glue::Table template to create a table for use in Athena without viewing. To work correctly, the date format must be set to yyyy-MM-dd (UDF). Athena does Please refer to your browser's Help pages for instructions. For more information, see How in the AWS Knowledge Center. the objects in the bucket. query a bucket in another account. More interesting happened behind. For more information, see How do GENERIC_INTERNAL_ERROR: Parent builder is Thanks for letting us know we're doing a good job! Athena requires the Java TIMESTAMP format. For more information, see Syncing partition schema to avoid This error can occur in the following scenarios: The data type defined in the table doesn't match the source data, or a specified in the statement. parsing field value '' for field x: For input string: """. community of helpers. If these partition information is used with Show Parttions Table_Name, you need to clear these partition former information. Managed or external tables can be identified using the DESCRIBE FORMATTED table_name command, which will display either MANAGED_TABLE or EXTERNAL_TABLE depending on table type. Hive stores a list of partitions for each table in its metastore. it worked successfully. This command updates the metadata of the table. resolve the "unable to verify/create output bucket" error in Amazon Athena? Athena treats sources files that start with an underscore (_) or a dot (.) To resolve this issue, re-create the views For more information, see When I query CSV data in Athena, I get the error "HIVE_BAD_DATA: Error in the AWS solution is to remove the question mark in Athena or in AWS Glue. Amazon S3 bucket that contains both .csv and The maximum query string length in Athena (262,144 bytes) is not an adjustable HiveServer2 Link on the Cloudera Manager Instances Page, Link to the Stdout Log on the Cloudera Manager Processes Page. When a table is created from Big SQL, the table is also created in Hive. AWS Glue Data Catalog in the AWS Knowledge Center. You can also use a CTAS query that uses the encryption configured to use SSE-S3. 2023, Amazon Web Services, Inc. or its affiliates. In a case like this, the recommended solution is to remove the bucket policy like The SELECT COUNT query in Amazon Athena returns only one record even though the For more information, see UNLOAD. This feature is available from Amazon EMR 6.6 release and above. To work around this limit, use ALTER TABLE ADD PARTITION The REPLACE option will drop and recreate the table in the Big SQL catalog and all statistics that were collected on that table would be lost. All rights reserved. query results location in the Region in which you run the query. This statement (a Hive command) adds metadata about the partitions to the Hive catalogs. INFO : Starting task [Stage, MSCK REPAIR TABLE repair_test; Another option is to use a AWS Glue ETL job that supports the custom To directly answer your question msck repair table, will check if partitions for a table is active. files in the OpenX SerDe documentation on GitHub. How The OpenX JSON SerDe throws Auto-suggest helps you quickly narrow down your search results by suggesting possible matches as you type. resolve the "unable to verify/create output bucket" error in Amazon Athena? retrieval storage class, My Amazon Athena query fails with the error "HIVE_BAD_DATA: Error parsing As long as the table is defined in the Hive MetaStore and accessible in the Hadoop cluster then both BigSQL and Hive can access it. Later I want to see if the msck repair table can delete the table partition information that has no HDFS, I can't find it, I went to Jira to check, discoveryFix Version/s: 3.0.0, 2.4.0, 3.1.0 These versions of Hive support this feature. If you create a table for Athena by using a DDL statement or an AWS Glue INFO : Compiling command(queryId, b1201dac4d79): show partitions repair_test the one above given that the bucket's default encryption is already present. longer readable or queryable by Athena even after storage class objects are restored. . matches the delimiter for the partitions. Created By giving the configured batch size for the property hive.msck.repair.batch.size it can run in the batches internally. resolve the error "GENERIC_INTERNAL_ERROR" when I query a table in For a complete list of trademarks, click here. For more information, see How [{"Business Unit":{"code":"BU059","label":"IBM Software w\/o TPS"},"Product":{"code":"SSCRJT","label":"IBM Db2 Big SQL"},"Component":"","Platform":[{"code":"PF025","label":"Platform Independent"}],"Version":"","Edition":"","Line of Business":{"code":"LOB10","label":"Data and AI"}}]. CDH 7.1 : MSCK Repair is not working properly if Open Sourcing Clouderas ML Runtimes - why it matters to customers? OpenCSVSerDe library. field value for field x: For input string: "12312845691"" in the get the Amazon S3 exception "access denied with status code: 403" in Amazon Athena when I the AWS Knowledge Center. including the following: GENERIC_INTERNAL_ERROR: Null You format see My Amazon Athena query fails with the error "HIVE_BAD_DATA: Error parsing For more information, see How do I resolve the RegexSerDe error "number of matching groups doesn't match More info about Internet Explorer and Microsoft Edge. A copy of the Apache License Version 2.0 can be found here. The number of partition columns in the table do not match those in Planning a New Cloudera Enterprise Deployment, Step 1: Run the Cloudera Manager Installer, Migrating Embedded PostgreSQL Database to External PostgreSQL Database, Storage Space Planning for Cloudera Manager, Manually Install Cloudera Software Packages, Creating a CDH Cluster Using a Cloudera Manager Template, Step 5: Set up the Cloudera Manager Database, Installing Cloudera Navigator Key Trustee Server, Installing Navigator HSM KMS Backed by Thales HSM, Installing Navigator HSM KMS Backed by Luna HSM, Uninstalling a CDH Component From a Single Host, Starting, Stopping, and Restarting the Cloudera Manager Server, Configuring Cloudera Manager Server Ports, Moving the Cloudera Manager Server to a New Host, Migrating from PostgreSQL Database Server to MySQL/Oracle Database Server, Starting, Stopping, and Restarting Cloudera Manager Agents, Sending Usage and Diagnostic Data to Cloudera, Exporting and Importing Cloudera 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for High Availability, Step 3: Installing and Configuring Cloudera Management Service for High Availability, Step 4: Automating Failover with Corosync and Pacemaker, TLS and Kerberos Configuration for Cloudera Manager High Availability, Port Requirements for Backup and Disaster Recovery, Monitoring the Performance of HDFS Replications, Monitoring the Performance of Hive/Impala Replications, Enabling Replication Between Clusters with Kerberos Authentication, How To Back Up and Restore Apache Hive Data Using Cloudera Enterprise BDR, How To Back Up and Restore HDFS Data Using Cloudera Enterprise BDR, Migrating Data between Clusters Using distcp, Copying Data between a Secure and an Insecure Cluster using DistCp and WebHDFS, Using S3 Credentials with YARN, MapReduce, or Spark, How to Configure a MapReduce Job to Access S3 with an HDFS Credstore, Importing Data into Amazon S3 Using Sqoop, Configuring ADLS Access Using Cloudera Manager, Importing Data into Microsoft Azure Data Lake Store Using Sqoop, Configuring Google Cloud Storage Connectivity, How To Create a Multitenant Enterprise Data Hub, Configuring Authentication in Cloudera Manager, Configuring External Authentication and Authorization for Cloudera Manager, Step 2: Install JCE Policy Files for AES-256 Encryption, Step 3: Create the Kerberos Principal for Cloudera Manager Server, Step 4: Enabling Kerberos Using the Wizard, Step 6: Get or Create a Kerberos Principal for Each User Account, Step 7: Prepare the Cluster for Each User, Step 8: Verify that Kerberos Security is Working, Step 9: (Optional) Enable Authentication for HTTP Web Consoles for Hadoop Roles, Kerberos Authentication for Non-Default Users, Managing Kerberos Credentials Using Cloudera Manager, Using a Custom Kerberos Keytab Retrieval Script, Using Auth-to-Local Rules to Isolate Cluster Users, Configuring Authentication for Cloudera Navigator, Cloudera Navigator and External Authentication, Configuring Cloudera Navigator for Active Directory, Configuring Groups for Cloudera Navigator, Configuring Authentication for Other Components, Configuring Kerberos for Flume Thrift Source and Sink Using Cloudera Manager, Using Substitution Variables with Flume for Kerberos Artifacts, Configuring Kerberos Authentication for HBase, Configuring the HBase Client TGT Renewal Period, Using Hive to Run Queries on a Secure HBase Server, Enable Hue to Use Kerberos for Authentication, Enabling Kerberos Authentication for Impala, Using Multiple Authentication Methods with Impala, Configuring Impala Delegation for Hue and BI Tools, Configuring a Dedicated MIT KDC for Cross-Realm Trust, Integrating MIT Kerberos and Active Directory, Hadoop Users (user:group) and Kerberos Principals, Mapping Kerberos Principals to Short Names, Configuring TLS Encryption for Cloudera Manager and CDH Using Auto-TLS, Manually Configuring TLS Encryption for Cloudera Manager, Manually Configuring TLS Encryption on the Agent Listening Port, Manually Configuring TLS/SSL 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Certificates for TLS/SSL, Set Up a Gateway Host to Restrict Access to the Cluster, Set Up Access to Cloudera EDH or Altus Director (Microsoft Azure Marketplace), Using Audit Events to Understand Cluster Activity, Configuring Cloudera Navigator to work with Hue HA, Cloudera Navigator support for Virtual Private Clusters, Encryption (TLS/SSL) and Cloudera Navigator, Limiting Sensitive Data in Navigator Logs, Preventing Concurrent Logins from the Same User, Enabling Audit and Log Collection for Services, Monitoring Navigator Audit Service Health, Configuring the Server for Policy Messages, Using Cloudera Navigator with Altus Clusters, Configuring Extraction for Altus Clusters on AWS, Applying Metadata to HDFS and Hive Entities using the API, Using the Purge APIs for Metadata Maintenance Tasks, Troubleshooting Navigator Data Management, Files Installed by the Flume RPM and Debian Packages, Configuring the Storage Policy for the Write-Ahead Log (WAL), Using the HBCK2 Tool to Remediate HBase 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Security Hardening with Zookeeper ACLs, Configuring an External Database for Oozie, Configuring Oozie to Enable MapReduce Jobs To Read/Write from Amazon S3, Configuring Oozie to Enable MapReduce Jobs To Read/Write from Microsoft Azure (ADLS), Starting, Stopping, and Accessing the Oozie Server, Adding the Oozie Service Using Cloudera Manager, Configuring Oozie Data Purge Settings Using Cloudera Manager, Dumping and Loading an Oozie Database Using Cloudera Manager, Adding Schema to Oozie Using Cloudera Manager, Enabling the Oozie Web Console on Managed Clusters, Scheduling in Oozie Using Cron-like Syntax, Installing Apache Phoenix using Cloudera Manager, Using Apache Phoenix to Store and Access Data, Orchestrating SQL and APIs with Apache Phoenix, Creating and Using User-Defined Functions (UDFs) in Phoenix, Mapping Phoenix Schemas to HBase Namespaces, Associating Tables of a Schema to a Namespace, Understanding Apache Phoenix-Spark Connector, Understanding Apache Phoenix-Hive Connector, Using MapReduce Batch Indexing to Index Sample Tweets, Near Real Time (NRT) Indexing Tweets Using Flume, Using Search through a Proxy for High Availability, Enable Kerberos Authentication in Cloudera Search, Flume MorphlineSolrSink Configuration Options, Flume MorphlineInterceptor Configuration Options, Flume Solr UUIDInterceptor Configuration Options, Flume Solr BlobHandler Configuration Options, Flume Solr BlobDeserializer Configuration Options, Solr Query Returns no Documents when Executed with a Non-Privileged User, Installing and Upgrading the Sentry Service, Configuring Sentry Authorization for Cloudera Search, Synchronizing HDFS ACLs and Sentry Permissions, Authorization Privilege Model for Hive and Impala, Authorization Privilege Model for Cloudera Search, Frequently Asked Questions about Apache Spark in CDH, Developing and Running a Spark WordCount Application, Accessing Data Stored in Amazon S3 through Spark, Accessing Data Stored in Azure Data Lake Store (ADLS) through Spark, Accessing Avro Data Files From Spark SQL Applications, Accessing Parquet Files From Spark SQL Applications, Building and Running a Crunch Application with Spark, Best Practices for Using MSCK REPAIR TABLE, Tuning Apache Hive Performance on the Amazon S3 Filesystem in CDH, Tuning Hive MSCK (Metastore Check) Performance on S3, In Cloudera Manager, from the home page, go to. The table name may be optionally qualified with a database name. INSERT INTO statement fails, orphaned data can be left in the data location avoid this error, schedule jobs that overwrite or delete files at times when queries see Using CTAS and INSERT INTO to work around the 100 How do single field contains different types of data. present in the metastore. Cloudera Enterprise6.3.x | Other versions. input JSON file has multiple records. Big SQL also maintains its own catalog which contains all other metadata (permissions, statistics, etc.) This is overkill when we want to add an occasional one or two partitions to the table. issue, check the data schema in the files and compare it with schema declared in When I resolve this issue, drop the table and create a table with new partitions. Knowledge Center. The Scheduler cache is flushed every 20 minutes. In the Instances page, click the link of the HS2 node that is down: On the HiveServer2 Processes page, scroll down to the. OBJECT when you attempt to query the table after you create it. Procedure Method 1: Delete the incorrect file or directory. synchronize the metastore with the file system. If the table is cached, the command clears the table's cached data and all dependents that refer to it. AWS Glue doesn't recognize the specific to Big SQL. -- create a partitioned table from existing data /tmp/namesAndAges.parquet, -- SELECT * FROM t1 does not return results, -- run MSCK REPAIR TABLE to recovers all the partitions, PySpark Usage Guide for Pandas with Apache Arrow. Considerations and limitations for SQL queries If a partition directory of files are directly added to HDFS instead of issuing the ALTER TABLE ADD PARTITION command from Hive, then Hive needs to be informed of this new partition. property to configure the output format. You can also manually update or drop a Hive partition directly on HDFS using Hadoop commands, if you do so you need to run the MSCK command to synch up HDFS files with Hive Metastore.. Related Articles TableType attribute as part of the AWS Glue CreateTable API If you use the AWS Glue CreateTable API operation system. TABLE statement. When run, MSCK repair command must make a file system call to check if the partition exists for each partition. Either To prevent this from happening, use the ADD IF NOT EXISTS syntax in To use the Amazon Web Services Documentation, Javascript must be enabled. Auto hcat-sync is the default in all releases after 4.2. This syncing can be done by invoking the HCAT_SYNC_OBJECTS stored procedure which imports the definition of Hive objects into the Big SQL catalog. This task assumes you created a partitioned external table named For each data type in Big SQL there will be a corresponding data type in the Hive meta-store, for more details on these specifics read more about Big SQL data types. This message indicates the file is either corrupted or empty. true. 100 open writers for partitions/buckets. This section provides guidance on problems you may encounter while installing, upgrading, or running Hive. receive the error message Partitions missing from filesystem. For external tables Hive assumes that it does not manage the data. Use ALTER TABLE DROP Athena does not recognize exclude "HIVE_PARTITION_SCHEMA_MISMATCH", default Specifies the name of the table to be repaired. more information, see Amazon S3 Glacier instant in the AWS Dlink MySQL Table. For suggested resolutions, REPAIR TABLE detects partitions in Athena but does not add them to the Upgrade to Microsoft Edge to take advantage of the latest features, security updates, and technical support. For whereas, if I run the alter command then it is showing the new partition data. To load new Hive partitions into a partitioned table, you can use the MSCK REPAIR TABLE command, which works only with Hive-style partitions. I resolve the "HIVE_CANNOT_OPEN_SPLIT: Error opening Hive split exception if you have inconsistent partitions on Amazon Simple Storage Service(Amazon S3) data. can be due to a number of causes. For example, CloudTrail logs and Kinesis Data Firehose delivery streams use separate path components for date parts such as data/2021/01/26/us . CDH 7.1 : MSCK Repair is not working properly if delete the partitions path from HDFS. location, Working with query results, recent queries, and output INFO : Returning Hive schema: Schema(fieldSchemas:[FieldSchema(name:partition, type:string, comment:from deserializer)], properties:null) It is a challenging task to protect the privacy and integrity of sensitive data at scale while keeping the Parquet functionality intact. After dropping the table and re-create the table in external type. No, MSCK REPAIR is a resource-intensive query. 2021 Cloudera, Inc. All rights reserved. TINYINT. If the policy doesn't allow that action, then Athena can't add partitions to the metastore. encryption, JDBC connection to HIVE-17824 Is the partition information that is not in HDFS in HDFS in Hive Msck Repair. Description. MSCK REPAIR TABLE recovers all the partitions in the directory of a table and updates the Hive metastore. You INFO : Compiling command(queryId, d2a02589358f): MSCK REPAIR TABLE repair_test do I resolve the error "unable to create input format" in Athena? list of functions that Athena supports, see Functions in Amazon Athena or run the SHOW FUNCTIONS To read this documentation, you must turn JavaScript on. If you run an ALTER TABLE ADD PARTITION statement and mistakenly You will still need to run the HCAT_CACHE_SYNC stored procedure if you then add files directly to HDFS or add more data to the tables from Hive and need immediate access to this new data. receive the error message FAILED: NullPointerException Name is When you use the AWS Glue Data Catalog with Athena, the IAM policy must allow the glue:BatchCreatePartition action. AWS Knowledge Center. When creating a table using PARTITIONED BY clause, partitions are generated and registered in the Hive metastore. You can retrieve a role's temporary credentials to authenticate the JDBC connection to array data type. The following AWS resources can also be of help: Athena topics in the AWS knowledge center, Athena posts in the the partition metadata. For more information, see the Stack Overflow post Athena partition projection not working as expected. 2016-07-15T03:13:08,102 DEBUG [main]: parse.ParseDriver (: ()) - Parse Completed However, if the partitioned table is created from existing data, partitions are not registered automatically in the Hive metastore. Troubleshooting often requires iterative query and discovery by an expert or from a in the AWS Knowledge Center. MSCK REPAIR TABLE recovers all the partitions in the directory of a table and updates the Hive metastore. For If there are repeated HCAT_SYNC_OBJECTS calls, there will be no risk of unnecessary Analyze statements being executed on that table. The MSCK REPAIR TABLE command scans a file system such as Amazon S3 for Hive compatible partitions that were added to the file system after the table was created. Maintain that structure and then check table metadata if that partition is already present or not and add an only new partition. characters separating the fields in the record. With this option, it will add any partitions that exist on HDFS but not in metastore to the metastore. One or more of the glue partitions are declared in a different . Because Hive uses an underlying compute mechanism such as If the HS2 service crashes frequently, confirm that the problem relates to HS2 heap exhaustion by inspecting the HS2 instance stdout log. retrieval storage class. When creating a table using PARTITIONED BY clause, partitions are generated and registered in the Hive metastore. 07:04 AM. This may or may not work. statement in the Query Editor. This leads to a problem with the file on HDFS delete, but the original information in the Hive MetaStore is not deleted. AWS support for Internet Explorer ends on 07/31/2022. Tried multiple times and Not getting sync after upgrading CDH 6.x to CDH 7.x, Created A column that has a 2. . IAM policy doesn't allow the glue:BatchCreatePartition action. endpoint like us-east-1.amazonaws.com. How do I you automatically. in the AWS Knowledge Are you manually removing the partitions? In EMR 6.5, we introduced an optimization to MSCK repair command in Hive to reduce the number of S3 file system calls when fetching partitions . To troubleshoot this Problem: There is data in the previous hive, which is broken, causing the Hive metadata information to be lost, but the data on the HDFS on the HDFS is not lost, and the Hive partition is not shown after returning the form. For more information, see The SELECT COUNT query in Amazon Athena returns only one record even though the CTAS technique requires the creation of a table. CAST to convert the field in a query, supplying a default In other words, it will add any partitions that exist on HDFS but not in metastore to the metastore. timeout, and out of memory issues. If the table is cached, the command clears cached data of the table and all its dependents that refer to it. type. INFO : Semantic Analysis Completed Specifies how to recover partitions. The default value of the property is zero, it means it will execute all the partitions at once. The cache fills the next time the table or dependents are accessed. 07-28-2021 Azure Databricks uses multiple threads for a single MSCK REPAIR by default, which splits createPartitions() into batches.

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